Ed'Nimbus

Development from the higher education and research community

Creation or important update: 18/11/11
Minor correction: 22/02/12

Index card author: Teresa Gomez-Diaz (LIGM)
Theme leader : Christelle Dantec (CRBM)

Keywords

Laboratories : LIGM
Head institution : CNRS, ESIEE, Univ Paris-Est Marne-la-Vallée (UPEMLV)
System : UNIX-like, Windows, MacOS X
Profession-activity : biology, developer
IT sector : profession
Use : personal
Main features : data processing

Ed'Nimbus : DNA sequence filtering

This software was developed (or is under development) within the higher education and research community. Its stability can vary (see fields below) and its working state is not guaranteed.

Web site
System: UNIX-like, Windows, MacOS X
Current version: 1.0 - july 2006
License(s): not yet chosen -
Status: stable release
Support: not maintained, no ongoing development
Designer(s): Pierre Peterlongo
Contact designer(s): Pierre.Peterlongo @ univ-mlv.fr
Laboratory, service: LIGM

General software features

The goal of this filter of DNA sequences is to filter sequences to extract some multiple repeats that full fill the specifications given by users. Ed'Nimbus can be used to find at least two repeats in a sequence, but also to find repeats in a set of sequences.

Context in which the software is used

Project HELIX of INRIA.

Publications related to the software

P. Peterlongo, N. Pisanti, A. Pereira do Lago, M.-F. Sagot, Lossless Filter for Long Multiple Repetitions with Edit Distance TR-06-11, Department of Computer Science, University of Pisa, 2006.
A more complet bibliography: http://igm.univ-mlv.fr/~peterlon/officiel/recherche/index.en.php

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Comments

Wed, 09/11/2011 - 19:25 — TGomezDiaz

This software is no longuer maintained.

Ed'nimbus is replaced by
Tuiuiu - Multiple Repeat Search Filter
http://mobyle.genouest.org/cgi-bin/Mobyle/portal.p...