X!TandemPipeline
General software features
X!TandemPipeline is a free software (GPL v3) that helps you to filter and group your peptide/protein identifications from MS/MS mass spectra.
Main features :
- easy to install and run (Windows 32 or 64bits, Linux, MacOsX)
- reads X!Tandem xml results files
- read MASCOT dat results files
- offer a graphical user interface (gui) to run X!Tandem analyses
- various filters based on statistical values at peptide and protein levels
- powerfull original grouping algorithm to filter redundancy
- "phosphopeptide" mode to handle phosphoproteomic datasets
- edit, search and sort your data graphically
- export your data directly to Microsoft Office 2010, OpenOffice and LibreOffice (ods export)
- handle huge datasets very quickly
- peptide quantification throught MassChroQml export
- online support throught the pappso-tools mailing list